PROXiMATE: Protein-protein complex mutation thermodynamics database. The complex shown here is 1DVF.

PROXiMATE: PROtein-protein compleX MutAtion ThErmodynamics Database

Indian Institute of Technology Madras

CITATION AND ACKNOWLEDGEMENT

Please cite us if the use of this database has helped you in your work and /or resulted in any publication:
Jemimah, S., Yugandhar, K. and Gromiha, M. M. (2017) PROXiMATE: A database of mutant protein-protein complex thermodynamics and kinetics. Bioinformatics. 33(17), 2787-88. DOI: 10.1093/bioinformatics/btx312

Also, please cite the literature source associated with the entries which you have used.

We are grateful for the use of the JSmol applet to view the complex structure for each entry. We also acknowledge the use of the STRING API to link protein interaction network data, and Bio.PDB's DSSP module from Biopython for DSSP calculations using DSSP 2.0.4.

  • DSSP: Kabsch,W., and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22(12), 2577-637.
  • JSmol: Hanson,R.M., et. al. (2013) JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia.Israel J. Chem., 53, 207-216.
  • STRING: Szklarczyk,D., et. al. (2015) STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res., 43(Database issue): D447-52.
Protein Bioinformatics Lab, Department of Biotechnology, Indian Institute of Technology Madras, Chennai, India. Last updated 11 February 2021. FAQs | Cite Us | Usage Notice | Contact Us | Important Links