PHYSICOCHEMICAL PROPERTIES
1 | Stacking energy | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
1.3 | 1.7 | 1.5 | 1.8 | 1.1 | 1.5 | 1.2 | 1.3 | 2.1 | 2.2 | 1.4 | 1.4 | 1.8 | 1.3 | 1.4 | 1.3 |
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2 | Enthalpy | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
8 | 9.4 | 6.6 | 5.6 | 8.2 | 10.9 | 11.8 | 6.6 | 8.8 | 10.5 | 10.9 | 9.4 | 6.6 | 8.8 | 8.2 | 8 |
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3 | Entropy | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
21.9 | 25.5 | 16.4 | 15.2 | 21 | 28.4 | 29 | 16.4 | 23.5 | 26.4 | 28.4 | 25.5 | 18.4 | 23.5 | 21 | 21.9 |
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4 | Flexibility_shift | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
5.35 | 9.73 | 8.98 | 1.13 | 4.61 | 5.51 | 12.13 | 8.98 | 5.44 | 1.98 | 5.51 | 9.73 | 4.28 | 5.44 | 4.61 | 5.35 |
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5 | Flexibility_slide | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
13.72 | 9.57 | 7.58 | 11.69 | 1.35 | 7.36 | 4.02 | 7.58 | 10.28 | 4.34 | 7.36 | 9.57 | 7.13 | 10.28 | 1.35 | 13.72 |
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6 | Free energy | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
0.67 | 1.28 | 1.17 | 0.62 | 1.19 | 1.55 | 1.87 | 1.17 | 1.12 | 1.85 | 1.55 | 1.28 | 0.7 | 1.12 | 1.19 | 0.67 |
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7 | Melting Temperature | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
54.5 | 97.73 | 58.42 | 57.02 | 54.71 | 85.97 | 72.55 | 58.42 | 86.44 | 136.12 | 85.97 | 97.73 | 36.73 | 86.44 | 54.71 | 54.5 |
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8 | Mobility to bend towards major groove | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
1.18 | 1.06 | 1.06 | 1.12 | 1.06 | 0.99 | 1.02 | 1.04 | 1.08 | 0.98 | 1 | 1.02 | 1.07 | 1.03 | 1.03 | 1.09 |
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9 | Mobility to bend towards minor groove | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
1.04 | 1.1 | 1.09 | 1.02 | 1.16 | 1.27 | 1.25 | 1.16 | 1.12 | 1.17 | 1.25 | 1.11 | 1.05 | 1.2 | 1.23 | 1.04 |
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10 | Probability contacting nucleosome core | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
18.4 | 10.2 | 14.5 | 7.2 | 15.7 | 10.2 | 1.1 | 14.5 | 11.3 | 5.2 | 10.2 | 10.2 | 6.2 | 11.3 | 15.7 | 18.4 |
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11 | Rise stiffness | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
7.65 | 8.93 | 7.08 | 9.07 | 6.38 | 8.04 | 6.23 | 7.08 | 8.56 | 9.53 | 8.04 | 8.93 | 6.23 | 8.56 | 6.38 | 7.65 |
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12 | Roll stiffness | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
0.02 | 23 | 19 | 22 | 17 | 19 | 16 | 19 | 0.02 | 26 | 19 | 23 | 16 | 0.02 | 17 | 0.02 |
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13 | Shift stiffness | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
1.69 | 1.32 | 1.46 | 1.03 | 1.07 | 1.43 | 1.08 | 1.46 | 1.32 | 1.2 | 1.43 | 1.32 | 0.72 | 1.32 | 1.07 | 1.69 |
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14 | Slide stiffness | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
2.26 | 3.03 | 2.03 | 3.83 | 1.78 | 1.65 | 2 | 2.03 | 1.93 | 2.61 | 1.65 | 3.03 | 1.2 | 1.93 | 1.78 | 2.26 |
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15 | Tilt stiffness | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
38 | 38 | 37 | 36 | 25 | 42 | 26 | 37 | 38 | 36 | 42 | 38 | 18 | 38 | 25 | 38 |
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16 | Twist stiffness | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
26 | 36 | 31 | 33 | 16 | 26 | 14 | 31 | 25 | 25 | 26 | 36 | 17 | 25 | 16 | 26 |
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M Friedel, S Nikolajewa, J Suehnel, T Wilhelm.DiProDB: a database for dinucleotide properties. Nucleic Acids Research (Database issue) 37 (2009) D37-40."
P. K. Ponnuswamy, M.Michael Gromiha Journal of Theoretical Biology 166(1), Pages 63-74