CONFORMATIONAL PROPERTIES
1 | Bend | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
3.07 | 2.97 | 2.31 | 2.6 | 3.58 | 2.16 | 2.81 | 2.31 | 2.51 | 3.06 | 2.16 | 2.97 | 6.74 | 2.51 | 3.58 | 3.07 |
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2 | Rise | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
3.16 | 3.41 | 3.63 | 3.89 | 3.23 | 4.08 | 3.6 | 3.63 | 3.47 | 3.81 | 4.08 | 3.41 | 3.21 | 3.47 | 3.23 | 3.16 |
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3 | Roll | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
5.4 | 2.5 | 1 | 7.3 | 6.8 | 1.3 | 4.6 | 1 | 2 | 3.7 | 1.3 | 2.5 | 8 | 2 | 6.8 | 5.4 |
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4 | Inclination | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
1.43 | 0.11 | 0.92 | 0 | 1.31 | 1.11 | 0 | 0.92 | 0.33 | 0 | 1.11 | 0.11 | 0 | 0.33 | 1.31 | 1.43 |
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5 | Major Groove Depth | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
9.12 | 9.41 | 8.96 | 8.96 | 8.67 | 8.45 | 8.81 | 8.96 | 8.76 | 8.67 | 8.45 | 9.41 | 9.6 | 8.76 | 8.67 | 9.12 |
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6 | Major Groove Distance | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
3.38 | 3.03 | 3.36 | 3.02 | 3.79 | 3.38 | 3.77 | 3.36 | 3.4 | 3.04 | 3.38 | 3.03 | 3.81 | 3.4 | 3.79 | 3.38 |
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7 | Major Groove Size | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
3.98 | 3.98 | 4.7 | 4.7 | 3.98 | 3.98 | 4.7 | 4.7 | 3.26 | 3.26 | 3.98 | 3.98 | 3.26 | 3.26 | 3.98 | 3.98 |
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8 | Major Groove Width | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
12.15 | 12.37 | 13.51 | 12.87 | 13.58 | 15.49 | 14.42 | 13.51 | 13.93 | 14.55 | 15.49 | 12.37 | 12.32 | 13.93 | 13.58 | 12.15 |
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9 | Minor Groove Depth | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
9.03 | 8.79 | 8.98 | 8.91 | 9.09 | 8.99 | 9.06 | 8.98 | 9.11 | 8.98 | 8.99 | 8.79 | 9 | 9.11 | 9.09 | 9.03 |
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10 | Minor Groove Distance | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
2.94 | 4.22 | 2.79 | 4.2 | 3.09 | 2.8 | 3.21 | 2.79 | 2.95 | 4.24 | 2.8 | 4.22 | 2.97 | 2.95 | 3.09 | 2.94 |
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11 | Minor Groove Size | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
2.98 | 3.26 | 3.98 | 3.26 | 3.7 | 3.98 | 4.7 | 3.98 | 2.98 | 3.26 | 3.98 | 3.26 | 2.7 | 2.98 | 3.7 | 2.98 |
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12 | Minor Groove Width | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
5.3 | 6.04 | 5.19 | 5.31 | 4.79 | 4.62 | 5.16 | 5.19 | 4.71 | 4.74 | 4.62 | 6.04 | 6.4 | 4.71 | 4.79 | 5.3 |
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13 | Shift | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
0.06 | 0.06 | 0.06 | 0.12 | 0.02 | 0.05 | 0.06 | 0.06 | 0 | 0.3 | 0.05 | 0.06 | 0.17 | 0 | 0.02 | 0.06 |
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14 | Persistance Length | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
35 | 60 | 60 | 20 | 60 | 130 | 85 | 60 | 60 | 85 | 130 | 60 | 20 | 60 | 60 | 35 |
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15 | Slide | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
0.16 | 0.43 | 0.34 | 0.57 | 1.88 | 0.28 | 0.68 | 0.34 | 0.01 | 0.31 | 0.28 | 0.43 | 0.38 | 0.01 | 1.88 | 0.16 |
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16 | Tilt | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
0.1 | 0.3 | 0.2 | 0.3 | 0 | 0.1 | 0 | 0.2 | 0 | 0 | 0.1 | 0.3 | 1.4 | 0 | 0 | 0.1 |
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17 | Tip | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
1.76 | 2 | 0.9 | 1.87 | 1.64 | 0.71 | 0.22 | 0.9 | 1.35 | 2.5 | 0.71 | 2 | 6.7 | 1.35 | 1.64 | 1.76 |
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18 | Twist | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
38.9 | 31.12 | 32.15 | 33.81 | 41.41 | 34.96 | 32.91 | 32.15 | 41.31 | 38.5 | 34.96 | 31.12 | 33.28 | 41.31 | 41.41 | 38.9 |
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19 | Roll (DNAprotein complex) | AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT |
0.8 | 0.2 | 5.6 | 0 | 6.4 | 3.3 | 6.5 | 5.6 | 2.4 | 2 | 3.3 | 0.2 | 2.7 | 2.4 | 6.4 | 0.8 |
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M Friedel, S Nikolajewa, J Suehnel, T Wilhelm.DiProDB: a database for dinucleotide properties. Nucleic Acids Research (Database issue) 37 (2009) D37-40."