Tools and link to publication Link to server

MPA-Pred: A machine learning approach for predicting the binding affinity of membrane protein-protein complexes.

CoDe: a web-based tool for codon deoptimization.

PDA-Pred: Predicting the binding affinity of protein-DNA complexes using machine learning techniques and structural features.

PDA-Pred

DeepBSRPred: deep learning-based binding site residue prediction for proteins.

Identification of potential driver mutations in glioblastoma using machine learning.

Predicting potential residues associated with lung cancer using deep neural network

CanProSite

Prediction of protein–carbohydrate complex binding affinity using structural features

PCA-Pred

ANuPP: A Versatile Tool to Predict Aggregation Nucleating Regions in Peptides and Proteins

ANuPP

MPTherm-pred: Analysis and Prediction of Thermal Stability Changes upon Mutations in Transmembrane Proteins

MPTherm-pred

Pred‐MutHTP: Prediction of disease‐causing and neutral mutations in human transmembrane proteins

PredMutHTP

VEPAD - Predicting the effect of variants associated with Alzheimer's disease using machine learning

VEPAD

AggreRATE-Pred: A mathematical model for the prediction of change in aggregation rate upon point mutation.

AggreRATE-Pred

ProAffiMuSeq: sequence-based prediction of change in binding affinity upon mutation in protein-protein complexes.

ProAffiMuSeq

Seq2Feature: a comprehensive web-based feature extraction tool.

Seq2Feature

Importance of functional groups in predicting the activity of small molecule inhibitors of Bcl-2 and Bcl-xL.

APPLE

AggreRATE-Disc Identifying aggregation rate enhancer or mitigator mutations.

AggreRATE-Disc

PDBparam: Online Resource for Computing Structural Parameters of Proteins.

GAP: towards almost 100 percent prediction for β-strand-mediated aggregating peptides with distinct morphologies.

Protein-protein binding affinity prediction from amino acid sequence.

Prediction of protein disorder upon amino acid substitutions

DIM-Pred

Prediction of Change in Protein Unfolding Rates upon Point Mutations in Two State Proteins

Discrimination of driver and passenger mutations in epidermal growth factor receptor in cancer.

Folding RaCe: A Robust Method for Predicting Changes in Protein Folding Rates upon Point Mutations.

Discrimination of beta-barrel membrane proteins using statistical methods.

Discrimination of outer membrane proteins using support vector machines

Prediction of membrane spanning beta-strands in outer membrane proteins.

Prediction of solvent accessibility using neural networks

NETASA

Real value prediction of solvent accessibility

RVP-NET

Discrimination of DNA binding proteins and prediction of their binding sites

DBS-PRED

Identifying the stabilizing residues in protein structures.

Structure based prediction of protein stability upon mutation

Prediction of protein mutant stability from amino acid sequence

iPTREE-STAB

Prediction of protein folding rates from amino acid sequence

FOLD-RATE

Identification of DNA-binding proteins

Prediction of RNA binding sites

Functional discrimination of membrane proteins using machine learning techniques

DISC-FUNCTION