Structure and function based selection of best predictors for identifying the binding sites in RNA binding proteins




Data sets

RNA typeDataset( PDB-ids with chain details )
mRNA2HW8:A,1KNZ:A,1WPU:A,3K62:A,3ER9:B,2XZO:A,1AV6:A
pre miRNA3A6P:A,3A6P:C
rRNA1FJG:C,1FJG:D,1FJG:E,1FJG:G,1FJG:I,1FJG:J,1FJG:K,1FJG:L,1FJG:M,1FJG:N,1FJG:P,1FJG:Q,1FJG:S,1FJG:T,1G1X:A,1G1X:B,1G1X:C
1I6U:A,1JBR:A,1JJ2:1,1JJ2:2,1JJ2:A,1JJ2:B,1JJ2:C,1JJ2:D,1JJ2:E,1JJ2:G,1JJ2:H,1JJ2:I,1JJ2:J,1JJ2:K,1JJ2:L,1JJ2:M,1JJ2:O,1JJ2:P,1JJ2:Q
1JJ2:R,1JJ2:S,1JJ2:T,1JJ2:U,1JJ2:V,1JJ2:W,1JJ2:X,1JJ2:Y,1JJ2:Z,1MMS:A,3IEV:A,3MOJ:B,1DFU:P,1FEU:A,2BH2:A,3AEV:B,3DH3:A,2ASB:A
sRNA1SDS:A
siRNA2BGG:A,1R9F:A,2ZI0:A
snRNA1A9N:A,1A9N:B,1URN:A
tRNA1ASY:A,1B23:P,1F7U:A,1FFY:A,1J1U:A,1K8W:A,1N78:A,1Q2R:A,1QF6:A,1QTQ:A,1SER:A,2FMT:A,3BT7:A,3B0U:X,2DU3:A,3FOZ:A,3AMT:A
1C0A:A,3HL2:A,2ZUE:A,3ADD:A,1U0B:B,2B3J:A,1VFG:A,4ARC:A,3OVB:A,2I82:A,2AZX:A
viral_RNA1A34:A,1DDL:A,1F8V:A,1H2C:A,1NB7:A,1PGL:2,2GIC:A,2JLV:A,2QUX:A,3T5N:A,2R7R:A,1ZDH:A







Reference:  Prediction of RNA binding residues: An extensive analysis based on structure and function to select the best predictor
                    Nagarajan, R. and Gromiha, M. M.
                    PLoS One (2014), 9 (3), e91140.
                    

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