Structure and function based selection of best predictors for identifying the binding sites in RNA binding proteins




Data sets

RNA conformationDataset( PDB-ids with chain details )
A1A34:A,3IAB:A,2GJW:A,3BSO:A,3A6P:C,3L25:A,1R9F:A,3AVX:A,2ZI0:A,3MOJ:B,3KMQ:A,3IAB:B,2BU1:A,3EQT:A,3OVB:A,3A6P:A,1YVP:A
2NUG:A,2BGG:A,2XLK:A,4E78:A,2XDB:A,3DD2:H,2ZKO:A,4ERD:A
RH1DFU:P,1FEU:A
T3KFU:E,2ZUE:A,1N78:A,1QF6:A,1U0B:B,2AZX:A,1SER:A,3AMT:A,3FOZ:A,3B0U:X,1FFY:A,1J1U:A,3KFU:F,2DU3:A,1H4S:A,1C0A:A,1QTQ:A
U3ADD:A,1M8V:A,2PJP:A,3V2D:U,2JLV:A,1VQO:1,2PO1:A,1VQO:D,1VFG:A,3V2D:8,1VQO:J,3V2D:2,1Q2R:A,1VQO:3,2VQE:C,1VQO:L,1VQO:P
1VQO:N,3V2D:E,2GIC:A,1VQO:Z,2XGJ:A,3R8S:2,3AEV:B,3V2D:3,3V2D:P,2VQE:R,3K62:A,1VQO:Q,3V2D:T,4ARC:A,2VQE:M,1HQ1:A,2VQE:G
1H2C:A,3O8C:A,1JBS:A,3O7V:X,3U2E:A,1UVJ:A,1VQO:G,3HL2:A,2QUX:A,1JID:A,2XS2:A,2B3J:A,1VQO:V,1VQO:T,3ER9:B,1VQO:W,2VQE:T
3RW6:A,1DDL:A,2VQE:E,3PEY:A,1A9N:B,2VQE:N,3SNP:A,1VQO:B,1OOA:A,1PGL:2,2VQE:H,1A9N:A,3PF4:A,3V2D:5,1VQO:A,3HAX:C,1VQO:2
1VQO:Y,2VQE:I,3R8S:M,1VQO:C,1VQO:M,1K8W:A,2A1R:A,2VQE:S,1ZBH:A,2ASB:A,2VQE:K,3V2D:V,2VQE:O,3IEV:A,2OZB:B,3RTJ:A,1VQO:E
3R2C:J,3V2D:H,1VQO:K,2F8K:A,3D2S:A,3V2D:7,1VQO:I,3V2D:I,3MDI:A,3V2D:0,1VQO:U,2XZO:A,3V2D:1,3V2C:Y,2VQE:B,2J0S:T,3V2D:W
3QJL:A,3GPQ:A,1VQO:R,2VQE:Q,3R2C:A,3T5N:A,1VQO:S,2I82:A,2R7R:A,3R9X:B,3RC8:A,3V22:V,1VQO:H,3V2D:4,2VQE:P,3IEM:A,2VQE:D
2VOO:A,3RER:A,1SDS:A,3V2D:R,2VQE:L,2R8S:H,2VQE:F,3V2D:6,1KNZ:A,1VQO:X,2BH2:A,1WPU:A,3BT7:A,2Q66:A,2A8V:A,1N35:A,2ANR:A
3OIN:A,4F3T:A,2Y8Y:A,2HW8:A







Reference:  Prediction of RNA binding residues: An extensive analysis based on structure and function to select the best predictor
                    Nagarajan, R. and Gromiha, M. M.
                    PLoS One (2014), 9 (3), e91140.
                    

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