Structure and function based selection of best predictors for identifying the binding sites in RNA binding proteins





Data sets

ClassDataset( PDB-ids with chain details )
All alpha proteins1F7U:A,1FFY:A,1HQ1:A,1M8X:A,1N78:A,1SER:A,1TFW:A,1U0B:B,1VFG:A,1VQO:V,1VQO:I,1VQO:P,1WSU:A,1YVP:A,2A8V:A
2GIC:A,2GXB:A,2J01:2,2J01:U,2NUG:A,2OZB:B,2Q66:A,2VOO:A,2VQE:R,2VQE:M,2VQE:T,2VQE:G
All beta proteins1ASY:A,1B23:P,1C0A:A,1DDL:A,1DFU:P,1FEU:A,1FFY:A,1H2C:A,1K8W:A,1KQ2:A,1M8V:A,1OOA:A,1PGL:2,1QTQ:A,1SI3:A
1VQO:T,1VQO:Q,1VQO:A,1VQO:K,1VQO:B,2A8V:A,2ASB:A,2BH2:A,2FMT:A,2J01:V,2J01:T,2J01:E,2VNU:D,2VQE:Q
Alpha and beta proteins (a\+b)1A9N:B,1ASY:A,1B2M:A,1C0A:A,1EC6:A,1F7U:A,1FXL:A,1H4S:A,1JBS:A,1JID:A,1K8W:A,1QF6:A,1R9F:A,1SDS:A,1SER:A
1TFW:A,1VFG:A,1VQO:S,1VQO:M,1VQO:X,1VQO:H,1VQO:R,1VQO:W,1VQO:D,1VQO:E,1WPU:A,2ASB:A,2BU1:A,2FK6:A,2GJW:A,2J01:8
2J01:W,2J01:R,2J01:3,2J01:I,2J01:1,2J01:4,2J01:H,2JEA:A,2JEA:B,2NUG:A,2Q66:A,2UUB:C,2VOO:A,2VQE:I,2VQE:F,2VQE:J,2VQE:D,2VQE:H
Alpha and beta proteins (a/b)1A9N:A,1AV6:A,1B23:P,1F7U:A,1FFY:A,1H4S:A,1J1U:A,1N78:A,1Q2R:A,1QF6:A,1QTQ:A,1U0B:B,1VQO:Y,1VQO:L,1VQO:J
1VQO:C,1VQO:N,1YVP:A,2AZX:A,2BGG:A,2BH2:A,2FMT:A,2GJW:A,2J01:P,2J0S:A,2VQE:B,2VQE:K
Low resolution protein structures2VQE:L,2VQE:O,2VQE:P,2VQE:S,2VQE:E
Multi-domain proteins (alpha and beta)1KNZ:A,1N35:A,1NB7:A,1UVJ:A,2E9T:A,2HW8:A
Peptides1VQO:G
Small proteins1VQO:U,1VQO:Z,1VQO:3,2J01:5,2VQE:N








Reference:  Prediction of RNA binding residues: An extensive analysis based on structure and function to select the best predictor
                    Nagarajan, R. and Gromiha, M. M.
                    PLoS One (2014), 9 (3), e91140.
                    

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