Publications

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2011
Raman K, Wagner A. Evolvability and robustness in a complex signalling circuit. Mol. BioSyst. 2011;7:1081–1092.
Raman K, Wagner A. The evolvability of programmable hardware. Journal of The Royal Society Interface. 2011;8:269–281.
Raman K, Chandra N. Systems Biology of Tuberculosis: Insights for Drug Discovery. In: Dubitzky W, Southgate J, Fuß H Understanding the Dynamics of Biological Systems. Understanding the Dynamics of Biological Systems. New York, NY; 2011. p. 83–110.
2010
Raman K. Construction and analysis of protein-protein interaction networks. Automated Experimentation. 2010;2:2.
Raman K, Chandra N. Systems biology. Resonance. 2010;15:131–153.
Raman K, Bhat AG, Chandra N. A systems perspective of host–pathogen interactions: predicting disease outcome in tuberculosis. Mol BioSyst. 2010;6:516–530.
2009
Raman K, Chandra N. Flux balance analysis of biological systems: applications and challenges. Brief Bioinform. 2009;10:435–449.
Raman K, Vashisht R, Chandra N. Strategies for efficient disruption of metabolism in Mycobacterium tuberculosis from network analysis. Mol. BioSyst. 2009;5:1740–1751.
2008
Raman K, Chandra N. Mycobacterium tuberculosis interactome analysis unravels potential pathways to drug resistance. BMC Microbiology. 2008;8:234.
Raman K, Chandra N, Raman K, Chandra N. PathwayAnalyser: A Systems Biology Tool for Flux Analysis of Metabolic Pathways. Nature Precedings [Internet]. 2008. Available from: http://dx.doi.org/10.1038/npre.2008.1868.1
Raman K, Kalidas Y, Chandra N. targetTB: A target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis. BMC Systems Biology. 2008;2:109.
2007
Raman K, Rajagopalan P, Chandra N. Hallmarks of mycolic acid biosynthesis: A comparative genomics study. Proteins: Structure, Function, and Bioinformatics. 2007;69:358–368.
Verkhedkar KD, Raman K, Chandra NR, Vishveshwara S. Metabolome Based Reaction Graphs of M. tuberculosis and M. leprae: A Comparative Network Analysis. PLoS ONE. 2007;2:e881+.
Raman K, Kalidas Y, Chandra N. Model Driven Drug Discovery: Principles and Practices. In: Chen J, Sidhu AS Biological Database Modeling. 1st ed. Biological Database Modeling. ; 2007. p. 163–188. Available from: http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20&path=ASIN/1596932589
2006
Raman K, Rajagopalan P, Chandra N. Principles and Practices of Pathway Modelling. Current Bioinformatics. 2006;1:147–160.
2005
Raman K, Rajagopalan P, Chandra N. Flux Balance Analysis of Mycolic Acid Pathway: Targets for Anti-Tubercular Drugs. PLoS Comput Biol. 2005;1:e46+.